species:   Scscl
pid:       PID1744
parent:    Ssc-milR-220
paralog:   
locus:     NW_001820835.1:1976499-1976580
matures:   ['UAGAGAUAUGGUUGAUAUGUGCC', 'UGCUACGUCUUCCGUAUCCUUCU']
srr:       SRR12527895
genome:    /Users/jax/+Genomes/Fungal_genomes/Scscl.GCF_000146945.2_ASM14694v2.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Xia2020-rh.SRR12527895.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Xia2020-rh.SRR12527895.cram NW_001820835.1:1976499-1976580

4 out of bounds
5 alignments
4 proper strand
3 stranded perfect matches

     ***************************                     ************************     
ACGUAAUCCGUGGGUGCUACGUCUUCCGUAUCCUUCUCGUACCAACACUUAGAGAUAUGGUUGAUAUGUGCCUUGAUAAAUC
.....(((...((((((...(((..(((((((((....((....))....)).)))))))..)))..)))))).))).....
-------------------------------------------------UAGAGAUAUGGUUGAUAUGUGCC---------- l=23 a=0 c
--------------UGCUACGUCUUCCGUAUCCUUCU--------------------------------------------- l=23 a=0 c*
-------------------------------------------------------UAUGGUUGAUAUGUGCCUUGAU----- l=22 a=1 ma
-------CCGUGGGUGCUACGUCUUCCGUAUC-------------------------------------------------- l=25 a=0 ma*

-------------------------------------------------------UAUGGUUGAUAUGUGCCUUGAU----- l=22 a=1 (ma)
-------------------------------------------------UAGAGAUAUGGUUGAUAUGUGC----------- l=22 a=1 
-------------------------------------------------UAGAGAUAUGGUUGAUAUGUGCa---------- l=23 a=1 
---------------------------------------UACCAACACUUAGAGAUAUGG---------------------- l=21 a=1 

mb-01011
ax-1001011
ku-01
ss-110110101100
fn-001
